Transition States

• Base
  • TSbase
  • displaced_species_along_mode()
  • forward_backward_isomorphic_to_reactant_product()
  • imag_mode_generates_other_bonds()
• Locate TSs
  • find_tss()
  • get_truncated_ts()
  • get_ts()
  • translate_rotate_reactant()
  • ts_guess_funcs_prms()
• Templates
  • TStemplate
  • get_ts_template_folder_path()
  • get_ts_templates()
  • get_value_from_file()
  • get_values_dict_from_file()
  • template_matches()
• Transition State
  • TransitionState
• Truncation
  • add_capping_atom()
  • add_capping_atoms()
  • add_core_pi_bonds()
  • add_remaining_atoms()
  • add_remaining_bonds()
  • get_truncated_species()
  • is_worth_truncating()
• TS Guess
  • TSguess
  • get_template_ts_guess()
  • has_matching_ts_templates()